Journal articles
- Castillo, D, Higuera, G., Villa, M, Middelboe, M. Dalsgaard I, Madsen, L, Espejo, R. (2012). Diversity of Flavobacterium psychrophilum and the potential use of its phages for protection against bacterial cold water disease in salmonids. J. Fish Dis. 35:193-201
- Madsen, L., Dalsgaard, I. and Middelboe, M. (2013) Dispersal and survival of Flavobacterium psychrophilum phages in vivo in rainbow trout and in vitro under laboratory conditions: Implications for their use in phage therapy. Appl. Environ. Microbiol. 79:4853-4861.
- Castillo, D., Espejo, R. and Middelboe, M. (2014) Characterization and genomic structure of the temperate bacteriophage 6H, and its distribution as prophage in Flavobacterium psychrophilum strains. FEMS Microbiol. Lett. 351:51-58.
- Castillo, D., Christiansen, RH., Espejo, R and Middelboe, M. (2014) Diversity and geographical distribution of Flavobacterium psychrophilum isolates and their phages: Patterns of susceptibility to phage infection and phage host range. Microb. Ecol. (DOI 10.1007/s00248-014-0375-8).
- Castillo, D., Christiansen, RH., Dalsgaard, I., Madsen, L., and Middelboe, M. (2015) Bacteriophage resistance mechanisms in the fish pathogen Flavobacterium psychrophilum: Linking genomic mutations to changes in bacterial virulence factors. Appl. Environm. Microbiol. 81, 1157-1167.
- Martiny, JH, Riemann, L., Marston, M. and Middelboe, M. (2014) Antagonistic coevolution of planktonic viruses and their hosts. Ann. Rev. Mar. Biol. 6:393-414.
- Christiansen, Madsen, L. Dalsgaard, I., Castillo, D, Kalatzis, PG, and Middelboe, M. (2015): Effect of bacteriophages on the growth of Flavobacterium psychrophilum and development of phage-resistant strains. Microb. Ecol in press
- Tan, D., Svenningsen, SL, Middelboe, M. (2015) Quorum sensing determines the choice of anti-phage defense strategy in Vibrio anguillarum. mBIO. In press
- Christiansen, RH., Dalsgaard, I., Middelboe, M. Lauritsen, AH. and Madsen, L. (2014). Detection and quantification of Flavobacterium psychrophilum specific phages In vivo in rainbow trout upon different administration methods: Implications for disease control in aquaculture. Appl. Environm. Microbiol. (80: 7683-7693).
- Romero, Jaime, et al. "Complete genome sequence of Vibrio anguillarum phage CHOED successfully used for phage therapy in aquaculture." Genome announcements 2.4 (2014): e00091-14
- Castillo D, D’Alvise P, Kalatzis PG, Kokkari C, Middelboe M, Gram L, Liu S, Katharios P. 2015. Draft genome sequences of Vibrio alginolyticus strains V1 and V2, opportunistic marine pathogens. Genome Announc 3(4):e00729-15. doi:10.1128/genomeA.00729-15
- Castillo D, Jun JW, Alvise PD, Middelboe M, Gram L, Liu S, Katharios P. 2015. Draft genome sequence of Vibrio parahaemolyticus VH3, isolated from an aquaculture environment in Greece. Genome Announc 3(4):e00731-15. doi:10.1128/genomeA.00731-15.
Conference papers/posters
- Christiansen et al: Poster: Danish Marine Research Meeting, 2011
- Effect of bacteriophages on the growth of Flavobacterium psychrophilum and development of phage-resistant strains. RH Christiansen, L Madsen, I Dalsgaard and M Middelboe. Poster presentation at Aquatic Virus Workshop, NIOZ, Holland. October 2011
- Phage-host interactions and development of resistance in Flavobacterium psychrophilum. RH Christiansen, L Madsen, I Dalsgaard and M Middelboe. Poster presentation at the Annual Meeting in Danish Society for Microbiology, November 2011
- Christiansen et al: Orals presentation: Danish Microbiological Society 2011
- Phage Isolation and Phage therapy against fish bacterial pathogens, Roberto Bastías, Gastón Higuera, Daniel Castillo, Monica Villa, Romilio T. Espejo, Marina Tediashvili, Mzia Kutateladze, Eka Tevdoradze, Tamuna Kokashvili, Pantelis Katharios, EAS 2011, Rhodes, Greece 2011
- Local and global scale host range patterns and distribution of bacteriophages infecting the fish pathogen Flavobacterium psychrophilum. Mathias Middelboe, Daniel Castillo, Rói H Cristiansen, Lone Madsen, Inger Dalsgaard, Romilio Espejo. ISME 2012, Copenhagen, Denmark
- Isolation and Study of Vibrio -Specific Phages for Prevention and Treatment of Diseases in Mediterranean Fish P. Katharios, T. Kokashvili, E. Tevdoradze. N. Skhirtladze, N. Toklikishvili, G. Tsertsvadze, N. Balarajishvili, M. Kutateladze, M. Tediashvili, ELIAVA INSTITUTE meeting 2012
- Laigaard et al: Oral presentation: Danish Marine Research Meeting, 2013
- Christiansen et al: Oral presentation: Dafinet workshop, 2013
- Bacteriophages against vibrios of live feeds in marine aquaculture hatchery, P.G. Kalatzis, R. Bastías, T. Kokashvili, E. Tevdoradze, M. Kutateladze, M. Tediashvili, C. Kokkari, P. Katharios, FEMS 2013, Leipzig Germany
- Christiansen R.H., L. Madsen, I. Dalsgaard and M. Middelboe. Detection and quantification of Flavobacterium psychrophilum specific bacteriophages in rainbow trout upon different administration methods: implications for disease control in aquaculture. EAFP 2013 Tampere Finland
- Isolation of Vibrio and Photobacterium species isolated from Greek Aquaculture. P. Katharios, P. Kalatzis, R. Bastias, C. Kokkari. EAFP 2013 Tampere Finland
- Castillo et al: Oral pres: Copenhagen Microbiology Center, meeting, 2013
- Vibrio harveyi infection in cultured common dentex (Dentex dentex) and greater amberjack (Seriola dumerili) and isolation of Vibrio bacteriophage. J.W. Jun, R.Bastias, M. Kutateladze, M. Tediashvili, P. Kalatzis, S.C. Park, P. Katharios. PHAGE 2014, Oxford, UK
- Tan et al: Poster presention: Bacteriophages 2015 meeting, London
Book chapters
- Kotzia, G. A., Platis, D., Axarli, I. Α., Chronopoulou, E., Karamitros, C., Labrou, N.E. (2012). Biocatalysis, Enzyme Engineering and Enzyme Biotechnology, In: Food Biochemistry and Food Processing, Second Edition. Edited by Benjamin Simpson, Leo Nollet, Gopinadhan Paliyath and Soottawat Benjakul. John Wiley & Sons, Inc., pp. 125-165
- N.E. Labrou (2014) Protein Downstream Processing: an overview. In: Methods in Molecular Biology, Protein downstream processing, Springer USA, Chapter 1, Vol 1129,3-10.